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How to...
The following tables give a list of descriptors that are available to configure your KoriBlast to install public databanks.
Their use is quite simple: click on the Download Descriptor link, save the file on your disk drive, switch to the Databank Manager of KoriBlast, click on the [Import] command and select the saved file; as soon as the descriptor has been imported into KoriBlast, you can delete that file.
Users contributions
Part of this content is contributed by our users: if you want to share some of your databank descriptors, simply contact our support by email.
An important reminder
Installing a databank may take some time because KoriBlast does a lot of operations to prepare the data: download files from (buzy) remote servers, uncrompress files, convert to Fasta, convert to Blast databanks, index features (annotated databanks only), etc. All of these steps are done automatically, but they are highly relying on the availability of public institute servers, as well as your web connection speed and computer performance.
Depending on the size of the databank, installation may take from a few minutes (PDB) up to two days or more (Genbank Core Nucleotide). It is advised to install large data set at nights (US time zone for NCBI, Europe time zone for EBI) or during week-ends.
Protein databanks| Name | Description | Last updated | Descriptor |
| Arabidopsis_thaliana_prot
| Tutorial example to show how to install the Arabidopsis thaliana proteome from GenBank/Genomes databank.
| March 07, 2012 | download |
| Genpept_Plant | Genbank Plant (PLN) division only database (annotations + Blast). | March 07, 2012 | download |
| PDB_proteins
| PDB Protein databank (Blast only).
| March 07, 2012 | download |
| Refseq_protein
| Refseq complete Protein databank (annotations + Blast).
| March 07, 2012 | download |
| Refseq_protein_RhesusMonkey | Refseq Rhesus Monkey Protein databank (annotations + Blast). | March 07, 2012 | download |
| Refseq_protein_viridiplantae | Refseq Viridiplantae Protein databank (annotations + Blast). | March 07, 2012 | download |
| Refseq_viral_protein | Refseq Viral Division Protein. | March 07, 2012 | download |
| SwissProt_human
| Tutorial example to show how to create a Human subset of UniprotKB/SwissProt: data + blast banks
| March 07, 2012 | download |
| UniprotKB_RhesusMonkey | UniprotKB (Sw+TrEmbl) databank (annotations + Blast). | March 07, 2012 | download |
| Uniprot_KB | UniprotKB (Sw+TrEmbl) databank (annotations + Blast). | March 07, 2012 | download |
| Uniprot_SwissProt
| UniprotKB/SwissProt databank (annotations + Blast).
| March 07, 2012 | download |
| Uniprot_TrEMBL
| UniprotKB/TrEMBL databank (annotations + Blast).
| March 07, 2012 | download |
| Yersinia_Angola_prot
| Tutorial example to show how to install the Yersinia pestis Angola proteome from GenBank/Genomes databank.
| March 07, 2012 | download |
| Yersinia_all_but_Angola_prot
| Tutorial example to show how to install all Yersinia pestis proteomes, excluding Angola, from GenBank/Genomes databank.
| March 07, 2012 | download |
Nucleotide databanks| Name | Description | Last updated | Descriptor |
| EMBL_CoreNucleotide | EMBL Core nucleotide database (annotations + Blast). STD EMBL division only. | March 07, 2012 | download |
| Genbank_Bacteria
| Tutorial example to show how to install Genbank Bacteria (BCT) division only database (annotations + Blast).
| March 07, 2012 | download |
| Genbank_CoreNucleotide | Genbank Core nucleotide database (annotations + Blast). All Genbank but EST, STS, GSS, HTG, HTC, CON and ENV. | March 07, 2012 | download |
| Genbank_CoreNucleotide_blast | Genbank Core nucleotide database (blast only). All Genbank but EST, STS, GSS, HTG, HTC, CON and ENV. | March 07, 2012 | download |
| Genbank_Patent | Genbank Patent Division (annotations + Blast). | March 07, 2012 | download |
| Genbank_Patent_blast | Genbank Patent Division (blast only). | March 07, 2012 | download |
| Genbank_other_vertebrate_full | Genbank: Other vertebrate sequence Division. | March 07, 2012 | download |
| Refseq_RNA_complete | Refseq complete RNA databank (Blast + annotations). | March 07, 2012 | download |
| Refseq_genome | Refseq complete Genome databank (annotations only). | March 07, 2012 | download |
| Refseq_genome_complete | Refseq complete Genome databank (Blast + annotations). | March 07, 2012 | download |
| Refseq_genome_seq | Refseq complete Genome databank (Blast only). | March 07, 2012 | download |
| Refseq_rna_seq | Refseq complete RNA databank (Blast only). | March 07, 2012 | download |
| RhesusMonkey_Genome | Rhesus Monkey assembled genome sequences (Blast only) | March 07, 2012 | download |
Biological classifications| Name | Description | Last updated | Descriptor |
| Enzyme
| Enzyme nomenclature
| March 07, 2012 | download |
| GeneOntology_terms
| Gene Ontology Terms
| March 07, 2012 | download |
| InterPro_terms
| InterPro Terms
| March 07, 2012 | download |
| NCBI_Taxonomy
| NCBI Taxonomy Scientific Terms and Tree Structure
| March 07, 2012 | download |
| Pfam_terms | Pfam Terms | March 07, 2012 | download |
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