If you produce Blast files using your own data production pipeline, it is possible to prepare your data sets to import them within the Global Analyse Module of KoriBlast.

 

The Global Viewer can import Blast result file using the well-known "csv" file format. As soon as a CSV file has been prepared as explained below, check the 'load' tab panel in the action panel below the plot of Global Viewer: from there you can import your data file.

 

Csv separators 

Column separator must be comma ','.

Values can be surrounded by double-quote ' " '.

 

Column List

The following properties must be provided (excepted 'features'):

 

Column name	Type	Mandatory
hit accession	alphanumeric	Y
hit definition	alphanumeric	Y
evalue	real	Y
Hit Coverage	real	Y
Query Coverage	real	Y
bitscore	real	Y
gaps	integer	Y
identities	integer	Y
positives	integer	Y
alignment length	integer	Y
query id	integer	Y
iteration id	integer	Y
hit id	integer	Y
features	alphanumeric	N

 

Column naming rules
- column name not case dependant,
- column order not mandatory,
- use of hypen or underscore instead of space authorized.
Examples : « HIT_DEFINITION » or « Hit-Definition » are accepted for "hit definition".

Real Format
Real format is used for floating point number representation.
'." is the separator for decimal, exponential notation is accepted.
Examples : 845.32, 2.75e-2, 35.8E+10, .25e-2

Features

You can add features to the hit in this column if they belong to the following categories:

 

Features	Prefix
InterPro	IPR
GeneOntology	GO
Enzyme	ENZ
Taxonomy	TAX
Organism	ORG

 

Syntax for 'features' column is :

FEATURE_CATEGORY_PREFIX1:  FEATURE_ENTRY1|FEATURE_ENTRY2|...;FEATURE_CATEGORY_PREFIX2:  FEATURE_ENTRY1|FEATURE_ENTRY2|...;

 

Between ...	Separator
feature categories	';'
category prefix and feature entry	':'
feature entries	'|'

 

Examples:

"IPR: IPR000438| IPR000022| IPR011762; ORG: Haemophilus influenzae "

"GO: GO0005886; ORG: Shigella flexneri."

"TAX: 272559; ORG: Bacteroides fragilis NCTC 9343"

"TAX: 336407; ENZ: 1.1.1.22; ORG: Rickettsia bellii RML369-C"

 

Identifiers:

 Following identifiers are mandatory:

 

query id	integer	Y
iteration id	integer	Y
hit id	integer	Y

 

Basic sample: 

Full sample:

Click here to get a sample data file you can open in the Global Analyse Module.