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Main Features
Databank Installation
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- Automatic deployment from remote servers
- Install public databanks (NCBI, EMBL, Uniprot,...)
- Prepare personal databanks
- Manage sequences, annotations and biological classifications
- Prepare taxonomic subsets from public databanks
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Databank Query
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- Sequences (nucleotides, proteins)
- 3D structures
- Query local and remote (NCBI, RSCB) services
- Batch retrieval of sequences
- Direct Blast submission
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Databank Search (Blast search)
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- Multi-threaded batch search of thousands of sequences
- Use local and remote systems (NCBI, EBI)
- Cluster/Grid enabled (SGE, PBS; MPI-Blast)
- Get fully annotated hits
- Filter results using Blast and/or annotation data
- Compare results to discover new and common hits
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| Data Visualization |
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- Sequences, 3D structures
- Alignments (pairwise and multiple)
- Tables, trees, position specific matrices
- Conserved regions
- Features, annotated Hit 2D plots
- Biological Classification (Taxonomy, GO, EC, ...)
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Data Management
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- Analyse data using convenient viewers
- Export data (text, spreadsheet, images, PDF, ...)
- Organize data safely over time
- Share data with other users
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Practical use cases
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KoriBlast can be used for:
> metagenomics. Read more about the applications of KoriBlast for funtional metagenomics analysis
> full genome & proteome comparisons
> microarray reannotations
> taxonomy & phylogenetic analyses
> pathways explorations
> functional & structural studies of proteins
> public and personal databanks management
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Have a look at the KoriBlast videos, or contact us to discuss with you the opportunities of using KoriBlast for your research work.
Boost your work with the KoriBlast Server
KoriBlast can be used with the KoriBlast Data Server. This software enables the use of a dedicated computer infrastructure to run annotated Blast jobs. The server software is compatible with SGE/OGE and PBS-Pro jobs scheduling systems, and is capable of using the standard Blast as well as mpiBlast.
Here is a snapshot of the two main solutions available to deploy the KoriBlast server:
Read more about the KoriBlast Server.
KoriBlast system requirements
Release notes
KoriBlast release notes are available here.
You can link to this page by using www.koriblast.com.
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and
platforms. It is ready for 64 bits computers. Read more about the system requirements.
