The ngKLAST platform
ngKLAST - formerly KoriBlast - sequence search alignment structure tree phylogenetic bioinformatics genomics proteomics Software design bioinformatic analysis biological databanks biological information systems

ngKLAST 4.1 is the brand new release of KoriBlast including the KLAST high-performance sequence similarity search tool.

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With an easy-to-use workflow engine and a unified set of data viewers, the ngKLAST platform makes large scale databanks exploration accessible to every life science researcher.

Download ngKLAST 4.1 product sheet.


Main Features
 Databank Installation
 

- Automatic deployment from remote servers
- Install public databanks (NCBI, EMBL, Uniprot,...)
- Prepare personal databanks
- Manage sequences, annotations and biological classifications
- Prepare taxonomic subsets from public databanks

 Databank Query
 

- Sequences (nucleotides, proteins)
- 3D structures
- Query local and remote (NCBI, RSCB) services
- Batch retrieval of sequences
- Direct KLAST submission

 Databank Search (KLAST search)
 

- High-performance comparisons of large sets of sequences using KLAST
- Run local search jobs on your multi-cores workstation
- Cluster/Grid enabled using the KLAST Server (KServer)
- Get fully annotated hits
- Filter results using KLAST and/or annotation data
- Compare results to discover new and common hits

 Data Visualization
 

- Sequences, 3D structures
- Alignments (pairwise and multiple)
- Tables, trees, position specific matrices
- Conserved regions
- Features, annotated Hit 2D plots
- Biological Classification (Taxonomy, GO, EC, ...)

 Data Management
 

- Analyse data using convenient viewers
- Export data (text, spreadsheet, images, PDF, ...)
- Organize data safely over time
- Share data with other users


Practical use cases
  ngKLAST can be used for:

> metagenomics. Read more about the applications of ngKLAST for funtional metagenomics analysis
> full genome & proteome comparisons
> microarray reannotations
> taxonomy & phylogenetic analyses
> pathways explorations
> functional & structural studies of proteins
> public and personal databanks management

Have a look at the ngKLAST videos, or contact us to discuss with you the opportunities of using ngKLAST for your research work.

The two Editions: ngKLAST vs. ngKLAST-LE

ngKLAST is available with two releases.

The full edition of ngKLAST contains all the features above mentioned, especially a local KLAST engine as well as the Databank Manager. It is intended to be used on a desktop workstation.

ngKLAST-LE is the Light Edition of the software intended to be used for client-server installation in cooperation with the KLAST Server (see below). In this edition, ngKLAST-LE does not include a local KLAST engine, nor the Databank Manager since KLAST jobs are executed remotely using a KLAST Server.


Boost your work with the KLAST Server
 
ngKLAST can be used with the KLAST Server (or KServer). This software enables the use of a dedicated computer infrastructure to run KLAST jobs (Klast comparison + data retrieval + data filtering). The server software is compatible with SGE/OGE and PBS-Pro jobs scheduling systems.

Here is a snapshot of the two main solutions available to deploy the KLAST server:

KLAST Server - Architecture - sequence search alignment structure tree phylogenetic bioinformatics genomics proteomics Software design bioinformatic analysis biological databanks biological information systems

ngKLAST system requirements
 
ngKLAST is available for use on linuxlogo.png,maclogo.pngandwinlogo.png platforms. It is ready for 64 bits computers. Read more about the system requirements.
 
 
Release notes
 
ngKLAST release notes are available here.
 

ngKLAST BrochureDownload ngKLAST 4.1 product sheet.

 
 
 
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